

Primary Amenorrhea
- Müllerian anomalies (≈ 47%) > gonadal dysgenesis (≈ 20.5%) > hypogonadotropic hypogonadism (≈ 14.7%)
Definition
- 13 years and no Menarche and no Breast budding (Tanner stage 1)
- 15 years and no menarche but Breast budding present (Tanner stage ≥ 2)
- No menarche by 3 years of thelarche
Initial Work-up
- Physical exam > UPT > USG > Hormone level > Karyotyping
- EPUHK
- Physical Examination:
- Assess breast development
- Check for pubic hair
- Palpate gonads (if suspecting gonadal dysgenesis)
- Urine Pregnancy Test (UPT):
- Should be done in all cases of primary amenorrhea
- Ultrasonography (USG):
- To determine the presence or absence of the uterus
- Hormone Levels:
- FSH
- LH
- Estrogen
- Karyotyping:
- Performed after initial assessment to identify chromosomal abnormalities
Compartment-Wise Causes and Classification
Organ | Cause | FSH | LH | Estrogen (E) | Classification |
Hypothalamus | Kallmann Syndrome (↓GnRH) | ↓ | ↓ | ↓ | Hypogonadotropic Hypogonadism |
Pituitary Gland | Craniopharyngioma | ↓ | ↓ | ↓ | Hypogonadotropic Hypogonadism |
Ovary | Gonadal Dysgenesis: | ã…¤ | ã…¤ | ã…¤ | Hypergonadotropic Hypogonadism |
ㅤ | • Turner's syndrome (45 XO) | ↑ | ↑ | ↓ | ㅤ |
ㅤ | • Swyer's syndrome (46 XY) | ↑ | ↑ | ↓ | ㅤ |
Uterus Absent | Müllerian Agenesis (46 XX): | N | N | N | (Normal FSH, LH, E) (Same as Cryptomenorrhea) |
ㅤ | Androgen Insensitivity Syndrome (46 XY): | N | ↑ | ↑ Androgen | (Same as PCOS) |
- Turner Mosaicism:
- 45 XO; 46XX (two cell lines present).
- Secondary amenorrhea
- Cardiac abnormalities
- Hearing loss → cholesteatoma
- insulin resistance
- ↑↑ r/o GONADOBLASTOMA
- Prophylactic gonadectomy is done
Note
- When FSH, LH, Oestrogen, Androgen = Normal
⇔ Height, pubic hair and breast Normal
Cryptomenorrhoea: Hidden Menstruation
- Definition: Hidden menstruation.
- Clinical Features:
- Cyclic abdominal pain monthly.
- Local Exam Differentiation (Outflow Obstructions):
- Imperforate Hymen:
- Most common cause.
- Tensed, bulging hymen.
- Cough impulse present.
- Transverse Vaginal Septum (TVS):
- Hymen not tensed/bulging.
- Cough impulse absent.
- Vaginal Atresia:
- Absence of vaginal opening.
- Per Rectal (PR) Exam:
- Bulky uterus (hematometra).
- Hematocolpus.
Condition | On Local Examination | ã…¤ |
Imperforate hymen (m/v/c) | Nothing given about local examination | ã…¤ |
Imperforate hymen | Tensed, bulging hymen or Cough impulse present → bluish swelling PR ↳ Bulge anterior Rx ↳ Cruciate Incision | Hematocolpus > hematometra |
Transverse vaginal septum | Not tensed, not bulging or Cough impulse absent PR ↳ Bulge at tip of finger → higher up Rx ↳ Excision of septum | Higher hematometra chance. • Can lead to retrograde menstruation. • Potential endometriosis |
Vaginal atresia | Vaginal opening absent | ã…¤ |
- Acute Presentation
- A/c urinary retention
- Imperforate hymen > Transverse vaginal septum
- Key Diagnostic Tool:
- MRI differentiates Imperforate hymen and TVS.
- Management
- Imperforate Hymen
- Cruciate incision on hymen.
Mullerian Agenesis /
Mayer-Rokitansky-Kuster-Hauser (MRKH) syndrome
- Definition/Defect:
- Absence of both Mullerian ducts
- Associated Anatomical Features:
- Ovary: Normal
- Ovulation: Normal
- Estrogen: Normal
- External Genitalia: Normal.
- Breast Development: Normal (Tanner stage 4/5).
- Pubic/Axillary Hair: Normal (Tanner stage 4/5).
- Internal Genitalia:
- Uterus: Absent.
- Fallopian Tubes: Distal part may be present.
- Vagina:
- Upper vagina absent.
- Lower vagina present.
- Sometimes entire vagina absent (vaginal atresia).
- Associated Anomalies:
- Renal anomalies:
- Common.
- Intravenous pyelogram (IVP) recommended.
- Skeletal anomalies.
- Endometriosis
- Theories
- Coelomic metaplasia OR
- Presence of Ectopic Mullerian tissue
- NOT by SAMSONS theory
- Clinical Presentation:
- Primary amenorrhoea.
- Difficulty in coitus.
- Management:
- Vaginoplasty.
- Techniques:
- McIndoe vaginoplasty.
- Laparoscopic Vecchietti technique.
- Timing: Just before/after marriage.
Gonadal Dysgenesis
Condition | Turner's Syndrome | Swyer's Syndrome |
Karyotype | 45 XO → Mutation in SHOX gene | 46 XY |
Patient Height | Short | Normal |
Additional Features | - Webbing of neck - Shield-like chest - Low posterior hairline | ã…¤ |
- Hormonal Profile:
- FSH: Increased
- LH: Increased
- Estrogen (E): Decreased
- Androgen: Decreased
- Common features for Turners, Sweyers and Kallman
- Estrogen (E): Decreased
- Androgen: Decreased
Feature | Description |
Breast development | Absent |
Pubic hair | Decreased/Absent |
- Diagnosis:Â Hypergonadotropic hypogonadism
Kallmann's Syndrome
- Gene Involved:Â Kal 1 gene
- Stature:Â Normal
- Defect → GnRH neurons → In olfactory epithelium → Fail to migrate to Hypothalamus
- Patient Complaints (P. c/o):
- Primary amenorrhea
- Infertility
- Delayed puberty
- Associated Feature:Â Anosmia
- Diagnosis:Â Hypogonadotropic hypogonadism
- Hormonal Profile:
- FSH: Decreased
- LH: Decreased
- Estrogen (E): Decreased
- Androgen: Decreased
- Demographics:
- Seen in both males and females
- Most common in: Males
- Management (Mx):Â Pulsatile GnRH
Turner's Syndrome




- Basic defect: 45, X0
- Turner Mosaicism:
- 45 XO; 46XX (two cell lines present).
- Secondary amenorrhea
- Cardiac abnormalities
- Hearing loss → cholesteatoma
- insulin resistance
- ↑↑ r/o GONADOBLASTOMA
- Prophylactic gonadectomy is done
Features
- Primary amenorrhea
- IQ: Usually normal.
- Sensorineural hearing loss
- Amenorrhea (Primary)
- Barr body absent
- ↑↑ Autoimmune Diseases
- Diabetes.
- Hashimoto's thyroiditis.
- Coeliac disease.
- NOT SLE → (SLE in Klinefelters)
Horseshoe kidney
- Turner’s syndrome
- Edward’s syndrome
- Risk of → Wilms T 2
- Edward turned above Horse
- Cystic hygroma
- Short stature
- High Arched Palate
- Nipples are widely spaced on a shield-shaped chest
- Webbed neck
- Due to lymphedema → Post resolution of cystic hygroma
- Webbed neck is associated with more chances of Cardiovascular malformations
- Low posterior hairline
- ↑↑ FSH, LH → Hypergonadotropic hypogonadism
- ↑↑ Carrying angle → Cubitus Valgus
- Short 4th metacarpal & Madelung
- [Short 5th distal phalanx → Downs]

- Female with absent Barr body = Turner
- Normal males: 1-1 = 0 Barr body
- Normal females: 2-1 = 1 Barr body
- Turner syndrome females: 1-1=0
Cardiac Anomaly:Â
- Bicuspid aortic valve (most common) > Coarctation of aorta.
- Most common cause of death → Coarctation of aorta
Ovaries:Â
- Rudimentary ovary / Streak ovary.
- Uterus Present
Dysgenetic/Undescended Testes (45XO/46XY):
- Increased malignancy risk.
- Gonadectomy recommended.
- Most common gonadal tumour: Gonadoblastoma.
- Most common gonadal malignancy: Dysgerminoma.
- Mnemonic: CLOWNS
- C → Cardiac, cubitus valgus
- L → Lymphedema
- O → Fibrosed ovaries
- W → Webbed neck
- N → Normal intelligence
- S →Short stature, with short 4th metacarpal and shield chest
Management Strategies
- NO GONADECTOMY
- Growth Hormone (GH):
- Administered only till 8 years old.
- Hormone Replacement Therapy (HRT):
- Oestrogen alone for 1 year.
- Followed by Oestrogen + Progesterone.
- Continued till normal menopause age.
- Pregnancy:
- Relative contraindication.
- Increased risk of cardiac disease.
Comprehensive Investigations
- Echocardiography (Echo): For cardiac anomalies.
- Renal Ultrasound (USG): For renal anomalies (horseshoe-shaped kidney).
- Thyroid Profile: TSH, T3, T4.
- Metabolic Screening:
- Complete Blood Count (CBC).
- Lipid Profile.
- Fasting Glucose.
- Organ Function Tests:
- Renal Function Tests (RFT).
- Liver Function Tests (LFT).
- Audiometry: For sensorineural hearing loss.
- Anti-Endomysial Antibodies: Increased risk of coeliac disease.
- Karyotyping: Definitive diagnostic investigation.
Comparison: Noonan Syndrome vs Turner Syndrome
Feature | Noonan Syndrome | Turner Syndrome |
Inheritance | Autosomal dominant | No inheritance pattern |
Karyotype | Normal (microscopic deletion) | 45, XO |
Sex affected | Both boys and girls | Only girls |
Intelligence | Intellectual disability present | Normal intelligence |
Puberty | Delayed puberty, fertility preserved | Infertile (streak ovaries, rudimentary uterus) |
Facial Features | Antimongoloid slant of eyes, low-set ears | Webbed neck (higher CHD risk) |
Congenital Heart Disease | More common; Pulmonary stenosis (supravalvular) | Less common, (A/w webbed neck) Bicuspid aortic valve > Coarctation of the aorta (death) |
- Children with Noonan syndrome
- More CHD than Turner syndrome
- Webbed neck in Turner
- Higher chance of CHD
- Antimongoloid slant
- Treacher-Collins syndrome
- !st pharyngeal arch defect
- Noonan syndrome
- Cri du chat syndrome
- Mnemonic:
- Teacher (Treacher collin) Noonil (Noonan) Mangalam (Antimongoloid) vayikkum

Cri du chat syndrome

- Chromosome 5
- Hypotonia
- Shrill cry
- Microcephaly, Mental retardation
- Anti mongoloid facies

Secondary Amenorrhea
Definition
- Absence of menstruation for 3 months (90 days) in a previously normally menstruating female.
Common Causes
- Most Common:Â Pregnancy (check UPT).
- Thyroid Disorders (check TSH).
- Increased Prolactin levels (check Prolactin level).
- LH, FSH & Estrogen levels.
Specific Causes and Findings
Organ | Condition | Features (Clinical & Hormonal) | Imaging/Other Investigations |
Hypothalamus (GnRH) | Anorexia, Bulimia, Physical Exertion, Stress Hypogonadotropic hypogonadism | ↓ LH, ↓ FSH, ↓ Estrogen | MRI ↑ → Normal |
Pituitary | Sheehan's Syndrome Hypogonadotropic hypogonadism | Necrosis of anterior pituitary d/t PPH. Sx: Inability to breastfeed (m/c) → persistent amenorrhea (2nd m/c). Hormones: GH → first ↓↓ LH, FSH, E ↓↓ , Prolactin ↓↓ TSH → last decreased. | MRI (Empty sella turcica) Insulin tolerance test • N → Cortisol level ↑↑ • Doesnt increase |
ㅤ | Prolactinoma Hypogonadotropic hypogonadism | Prolactin secreting pituitary adenoma. Symptoms: Secondary amenorrhea (m/c), Infertility (2nd m/c), galactorrhea, headache, visual disturbances. Hormones: LH, FSH, E ↓↓ Prolactin ↑↑ | MRI (space occupying lesion) DOC: Cabergoline (Dopamine agonist). In pregnancy & lactation, treat only if visual disturbance. |
Ovary | POI | Absent follicles, no ovulation, infertility, hot flashes, osteoporosis. Hormones: LH, FSH ↑↑, E, P ↓↓ | AMH ↓↓ (d/t ↓ sed follicles) → 1-3 = Normal → <1 = Suggestive of POI → <0.5 = Diagnostic of POI FSH >= 40 is diagnostic. |
Ovary | PCOS | Secondary amenorrhea, hirsutism, insulin resistance. Hormones: FSH → N, LH → ↑, E → N/↑, AMH → ↑ (produced by small follicles) | Progesterone challenge test: Positive LH : FSH = 2:1 or 3:1 (N = 1:1) E1 : E2 = 2:1 (N = 1:2) |
Uterus | Asherman Syndrome | Infertility, secondary amenorrhea, hypomenorrhea. Hormones: LH, FSH, E normal (unless primary defect elsewhere). | E, P challenge test: Negative |

Note:
- In entire Gyni, there are two conditions where LH high, FSH normal (LH > FSH)
- PCOS → Secondary amenorrhea
- AIS → Primary amenorrhea
Diagnosis of POI:
- Both FSH and LH ↑↑, but FSH > LH
- FSH levels.
- (N): 1–10 IU.
- Suggestive: ≥ 25 IU.
- Diagnostic: ≥ 40 IU.
- AMH
- Glycoprotein hormone
- Gene for MIS/AMH
- Chromosome 19
- Produced by
- Sertoli cells at 7 weeks
- Granulosa cells of preantral and small antral follicles
- Function: Regression of Mullerian Duct in males.
- Best test for Ovarian reserve
- Done any day
- 1 - 3 = Normal
- High AMH
- > 3: PCOS
- > 3.3: High risk of OHSS
- Good outcome of IVF
- Low AMH
- <1 = Suggestive of POI (Poor Ovarian reserve)
- <0.5 = Diagnostic of POI
- Mnemonic: Ammachi (AMH ↓↓) ayi FISH POI
Pituitary Apoplexy
Definition
- Acute infarction/haemorrhage of the pituitary gland in a patient with
- undiagnosed pituitary adenoma.
- Sheehan's + Prolactinoma
Precipitating Factors
- Postpartum hemorrhage
- Hypertension.
- Diabetes Mellitus (DM).
Presentation
- History:Â PPH (Postpartum Hemorrhage).
- Clinical Features (C/F):
- Postpartum shock f/b
- Headache & visual disturbance (due to pressure from adenoma).
- Hypotension & Hypoglycemia (due to decreased cortisol).
Investigations
- All pituitary hormones decreased.
Treatment
- First Line:Â
- Corticosteroid supplementation.
- Followed by thyroid hormone, sex steroid, vasopressin, and GH replacement as needed.
- Indications for Surgery:Â
- Progressive visual loss,
- cranial nerve involvement,
- loss of consciousness.
Menopause
- Age worldwide: 51 years.
- Age India: 47 years.
- POI/Premature menopause: menopause < 40 yrs (Primary ovarian insufficiency).
- Late menopause: Not achieved at ≥ 55 yrs.
- Diagnosis: clinical, amenorrhea ≥12 months.
Hot Flashes
- Vasomotor symptom.
- Due to: Decreased Estrogen, ↑ FSH
- Imbalance in: Serotonin & norepinephrine.
- More at: Night (night sweats).
- Feeling of: intense heat followed by sweating.
- Severe hot flash: affects daily activities.
- Seen in: Perimenopausal & menopausal Females.
Management:
- 1st line
- HRT: Severe hot flashes.
- If uterus (+) → E+P
- If uterus (-) → E only
- 2nd line:
- SSRI: Fluoxetine.
- SERM approved:
- E + Bazedoxifene.
- Others:
- Phytoestrogens, clonidine, gabapentin, tibolone.
- Drugs not used:
- Clomiphene, raloxifene, tamoxifen.
- All leads to hot flashes
- Mnemonic:
- Hot (HRT) flashes (Fluoxetine) based (Bazedoxifene) fights (Phytoestrogen)
- Between 5 (gabaPentine) clones (Clonidine)
Senile Vaginitis/Genitourinary Syndrome of Menopause
- Due to decreased Estrogen.
- Patient c/o: vaginal dryness, spotting, dyspareunia.
- Management:
- 1st line: Vaginal lubricants.
- 2nd line: HRT (Estrogen cream).
- SERM used: Ospemifene.
- Mnemonic: OsnnuPainwhileFucking (Ospemifene)
- SERMs not used: Clomiphene, Raloxifene, Tamoxifen.
Coronary Artery Disease
- Estrogen is cardioprotective (→ ↑↑ HDL, ↓↓ LDL).
- After menopause CAD risk increases but HRT not given for prevention.
- In females ≥ 60 y:
- HRT slightly increases CAD risk.
- E+P HRT >Â E only HRT.
Osteoporosis
- Decreased Estrogen, quantitative defect.
- C/o backache.
- M/C fractures: Vertebral > Neck of femur > Colle's fracture.
- Compulsory bone mineral density check: Dexa scan (IOC).
- Management:
- Bisphosphonates: Alendronate (1st line).
- SERM: Raloxifene.
- Others:
- Tibolone,
- teriparatide (PTH analogue),
- strontium,
- denosumab (Rank ligand antagonist).
- Drugs on osteoblasts:
- Teriparatide,
- strontium.
- Mnemonic: Do not (Denozumab) tell (Tibolone) teri (Teriparatide) strongly (Strontium) to Rolex (Raloxifene) → He is the ser (SERM) → Adichodikkum (Osteoporosis)
Hormone Replacement Therapy

- OE HRT → OEstrogen → Ovarian, Endometrial Cancer
- O + P HRT → Oestrogen + B → Ovarian + Breast Ca
- HRT does not increase: Ca cervix risk.
- Note:
- Cervical cancer ↑ by OCP
- HRT does not decrease: CAD.
Common C/I of HRT
- H/O breast cancer.
- H/O thrombosis.
- H/O MI or stroke.
- Active liver disease.
- Undiagnosed vaginal bleeding.
- Severe uncontrolled hypertension.
- Severe increased TG.
- Diabetes with vasculopathy.
- Migraine with aura.
- ≥ 35 years + smoker.
Only Indication
- Severe hot flashes.
- If uterus is present: E + P.
- If uterus is absent: E only.
- M/C estrogen used in HRT: β 17 estradiol.
- HRT is not a contraceptive agent.
E HRT
- Advantage:
- Decreased Hot Flashes.
- Decreased Osteoporosis.
- Decreased Colorectal carcinoma.
- Disadvantage:
- Increased Endometrial cancer
- Increased Thrombosis.
- Increased Ovarian cancer.
E+P HRT
- Advantage:
- Decreased Hot Flashes.
- Decreased Osteoporosis.
- Decreased Colorectal carcinoma.
- Decreased Endometrial cancer.
- Disadvantage:
- Increased Thrombosis.
- Increased Ovarian cancer.
- Increased Breast cancer.
HRT for Post Menopausal Females
- Maximum 5 years.
For peri menopausal females/Turner syndrome/POI:
- Till normal age of menopause.
Â